STAMP for Mac and the web

Statistical Analysis of Metagenomic Profiles, native on Apple Silicon and in the browser. A port of STAMP 2.1.3.

Port
Upstream's statistics, plots, windows and menus on a new runtime. Replaces the Windows build under Wine or a virtual machine.
Parity
2,558 scenarios match the original Python 2.7 build: values within 1e-6, every significance decision identical.
Mac
M1 or later, macOS 12 or later. Signed, notarized, updated through Sparkle.
Browser
The Python engine on Pyodide in a Web Worker; no data leaves the browser. Adds sessions, share links and a lab report.
Stack
Python 3.12, PyQt6, matplotlib 3.11, NumPy 2, SciPy 1.18. GPL-3.0-or-later.

Run in your browserDownload for MacSourceCite

By Donovan Parks, Gene Tyson, Philip Hugenholtz and Robert Beiko (Bioinformatics, 2014; upstream source). Please cite their paper.

STAMP in the browser with the Skirball soil example loaded: statistical properties panel, group legend and a PCA plot of phylum-level profiles.

Other contact: